Week One | Explore data

GSoC Project

• GSoC Project URL
• Work Repository

Mentor: Augustin Luna (@cannin)

Tasks

1. Document Project Dependencies.
   Status: In progress.
   Branch: None.
   PR: None.

   I’m still struggling to create the binder environment.

2. Reformat CellMinerCDB Data for DrugCell .
   Status: In progress.
   Branch: 6-drugcell-test. PR: None.

   I can extract from rcellminer.

3. Run DrugCell Model on CellMinerCDB Data.
   Status: In progress.
   Branch: 6-drugcell-test.
   PR: None.

   I can run DrugCell with rcellminer data.

Comments

Finally, I can run DrugCell with rcellminer data. But there are too many steps. So I wanna be more simple. But anyway I can go further by today’s result! 👏 By the way, creating binder environment is still difficult. Today, I can install all of the libraries but somehow there are PATH problem for rpy2, so I’ll try to deal with this sometime.

Next Step

• Share today’s progress with Augustin.
• Analyse results in detail.