GNN Based Drug Response Prediction GSoC 2022

View the Project on GitHub cannin/graph_neural_network_drug_response

10 July 2022

Week four | retrain model with rcellminer's drug data

by Yoshitaka Inoue

GSoC Project

Mentor: Augustin Luna (@cannin)

Tasks

  1. Re-train DrugCell model.
    Status: Done.
    Branch: 6-drugcell-test.
    PR: None.

    I did retraining again.

Comments

I tried to tune this model but it takes over 30 hours and need to hyper parameter tuning (layer), this is not enough to use colab.
So from next week, I plan to use the other GPU machine to tune and try to run over 2 or 3 days.
I still don’t understand model completely and probably this model looks complicated.
So, I think it takes 2 or more weeks to get good results. (I hope to get good result asap though.)

Next Step

tags: gsoc